Octant is scaling drug discovery to navigate the complexity of human disease
Octant is a therapeutics company building drugs that match the complexity of human diseases.
We are building drugs with novel mechanisms of actions guided by massive datasets in engineered human cells that unlock insights between genetics, chemistry, biochemical function, and disease phenotypes. Our platform uses synthetic biology, high throughput multiplexed assays, synthetic chemistry, and computation to engineer and interrogate drugs, proteins, and signaling pathways at unprecedented scales.
Despite the proliferation of genomic data, clinical data, and new biological technologies, many of the most pressing diseases in society are proving intractable with the current approaches. In many disease areas, we have more information than we dreamed we’d ever had, and we still have no idea where to start-- what exactly to drug in the first place? Some conditions present as one disease, when they’re actually a multitude of different diseases. In many diseases, we know a particular gene is involved in the disease, but have no idea which molecular mechanism will “fix” it.
Octant envisions a new approach to tackle these problems. We believe that recent advances in synthetic biology enable a new type of biotechnology. For example, we can today engineer cells to compute biological information at far greater accuracy and throughput than computational simulation. We set out on a journey to map the biochemical mechanisms that link genetics and chemical features to the disease. Because, ultimately, it’s the biochemical mechanisms that we drug.
Since then, we’ve been busy building a different type of company- of and by technologists- for patients.
We focus on complex but genetically validated diseases that society is falling behind on. We’ve set out to tackle very hard problems in multi-factorial diseases. Because if we don’t do it, who will?
We're a therapeutics company integrating and scaling new technologies.
We’re building an antedisciplinary movement to chart new approaches to drug discovery. Whether you’re a scientist, an engineer, or in operations, we’re working together to build a new type of company. It’s a challenging but fun journey.
We’re hacking the most complicated systems on the planet. It’s hard. We keep our sense of humor about it (if there’s a way to make something a company competition, lookout).
From gene sequencing, to synthesis, to editing, to automation, to compute, society is equipped with technologies we couldn’t have dreamed of ten years ago. Why do what everybody else is doing when there’s so much more to be done?
We’re mixing and remixing technologies to decode and target disease. We’re straight with each other, kind to each other, and stretching each other towards the next breakthrough.
These are early days of the next age of drug discovery. Come invent the future with us.
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Alice is an experienced business development & licensing professional with a background in law & management consulting. She is passionate about promoting innovation through collaboration among investors, biotech start-ups and big pharma to bring medicines to patients.
Alice has a proven track record in leading complex, high impact transactions across multiple technology platforms and therapeutic areas for pharmaceutical and biotech companies. Before Octant, Alice was at Genentech/Roche as a Business Development Project Leader in Pharma Partnering and Asst. General Counsel in Legal supporting Pharma Partnering, Mergers & Acquisitions, and Pharma Technical External Collaborations. Prior to Genentech, Alice was transactional counsel at the law firm Wilson Sonsini Goodrich & Rosati in Palo Alto and supported key partnerships and mergers and acquisitions for large pharmaceutical and small biotech companies. Alice received her B.A. from Stanford University in Human Biology and J.D. from Columbia University School of Law.
Alice aspires to improve her tennis game, conquer her fear of downhill mountain biking, and (re)learn how to play Grieg’s Piano Concerto in A minor.
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Dan is a veteran in the biotech industry and has worked for companies ranging in size from tiny startup to big pharma. Prior to joining Octant, he was CFO at Kriya Therapeutics where he started and built the finance and HR organizations. Before that, Dan served as VP Finance at Portola Pharmaceuticals and was an instrumental member of the leadership team that transformed the company from a private, development stage, US company to a public, commercial stage company which launched two products in the US and expanded into Europe. He has also worked at Johnson & Johnson and Gilead Sciences, holding positions of increasing responsibility. Dan started his career as a Research Associate at SyStemix, Inc. where he realized that though he loved science, he was not a scientist, and so transitioned to a career in Finance.
Dan received a B.A. in Molecular Cell Biology from the University of California, Berkeley and an MBA from the University of Southern California.
When not at Octant, Dan enjoys spending time with family, traveling the world, and exploring museums floor by floor and exhibit by exhibit.
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Hannah Shen is passionate about developing novel therapies for diseases with a high unmet need. She joined Octant Bio as VP of Strategy to formulate corporate and R&D strategies to engineer impactful drugs for patients.
Prior to joining Octant, Hannah was VP of the Asset Acquisition team at BridgeBio, leading a tight-knit five-person team responsible for identifying, diligencing, and bringing in new therapies. She was involved in the creation of 15+ new programs and shaped the inception of BridgeBio X. Before then, Hannah was employee number 17 at software company Benchling, where she led initial efforts to develop marketing and business development strategy, leading to 8x revenue growth over the first 18 months and Benchling’s first two deals with top 5 pharma companies.
Hannah received her PhD in molecular biology from Harvard University, where she studied the neuronal basis of chemotaxis in C. elegans. Her work led to a co-first-author publication in Nature. She grew up in Taipei, Taiwan, and loves hiking, trying new foods, cats, and volleyball.
Papers
https://www.nature.com/articles/s41592-018-0233-6
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Josh is an engineer passionate about working at the intersection of biology, statistics, and computation. He was previously the Head of Bioinformatics at Invitae, where he built and supported a team responsible for delivering methods and software for the genomic analysis of millions of patients per year. He has led technical efforts ranging from the design and validation of novel statistical techniques to architecting enterprise software systems.
Josh received his PhD in Computer Science at UC Berkeley in Yun Song's group, where he worked on computationally tractable approaches to incorporating recombination in population genetic models. He received a BS in Physics and Computer Science at the University of Illinois.
Outside of work, Josh enjoys riding vintage bicycles, minimalist running, rock climbing, and cooking for his wife and two sons.
Truty, R., Paul, J.S., Kennemer, M., Lincoln, S.E., Olivares, E., Nussbaum, R.L., Aradhya, S. Prevalence and properties of intragenic copy-number variation in Mendelian disease genes. Genetics in Medicine, 21 (2019) 114-123.
Lincoln, S.E., Truty, R., Lin, C, Zook, J.M., Paul, J.S., Ramey, V.H., Salit, M., Rehm, H.L., Nussbaum, R.L.,Lebo, M.S. A Rigorous Interlaboratory Examination of the Need to Confirm Next-Generation Sequencing-Detected Variants with an Orthogonal Method in Clinical Genetic Testing. The Journal of Molecular Diagnostics, 21 (2019) 318-329.
Westbrook, M., Kvitek, D., Gafni, E., Paul, J.S., Kennemer, M., Winder, T., Shieh, P. Prevalence and properties of intragenic copy-number variation in Mendelian disease genes. Neurology, 90 (2018)
Steinrücken, M., Paul, J.S., and Song, Y.S. A sequentially Markov conditional sampling distribution for structured populations with migration and recombination. Theoretical Population Biology 87 (2013) 51-61.
Paul, J.S. and Song, Y.S. Blockwise HMM computation for large-scale population genomic inference. Bioinformatics, 28 (2012) 2008-2015.
Nielsen, R., Paul, J.S., Albrechtsen, A., and Song, Y.S. Genotype and SNP calling from next-generation sequencing data. Nature Reviews Genetics 12 (2011) 443-451.
Paul, J.S., Steinrücken, M., and Song, Y.S. An accurate sequentially Markov conditional sampling distribution for the coalescent with recombination. Genetics 187 (2011) 1115-1128
Paul, J.S. and Song, Y.S. A principled approach to deriving approximate conditional sampling distributions in population genetics models with recombination. Genetics 186 (2010) 321-338.
Mark Murcko was an early leader in structure-based drug design and has directly contributed to nine marketed drugs spanning HIV, HCV, cystic fibrosis, and glaucoma. He is a Founder, Board member, and was the interim CSO at Relay Therapeutics. More recently he was the founding CSO and remains a board member and advisor to Dewpoint Therapeutics. In addition, Mark is a senior lecturer in the Department of Biological Engineering at MIT, and has served on numerous scientific advisory boards and corporate boards of directors for a diverse range of organizations. Mark was chief technology officer and chair of the SAB of Vertex Pharmaceuticals and was responsible for the identification, validation and implementation of disruptive technologies across R&D. Mark is a co-inventor of the HCV protease inhibitor Incivek (telaprevir), as well as Agenerase (amprenavir) and Lexiva (fosamprenavir), Vertex’s two marketed drugs for the treatment of HIV. In addition, he guided the early efforts of Vertex’s cystic fibrosis program that has produced four marketed drugs.
Prior to Vertex, Mark worked at Merck Sharpe & Dohme, where he helped discover multiple clinical candidates, including Dorzolamide, a carbonic anhydrase inhibitor for the treatment of glaucoma which was commercialized in two approved drugs, Trusopt and Cosopt. Trusopt was the first medicine in history to come from a structure-based drug design program. He is a member of the Board of Trustees of the GRC and the Board of Advisors of the Boston Museum of Science. He is a co-inventor on more than 50 issued patents and has co-authored more than 85 scientific articles. Mark holds a Ph.D. in organic chemistry from Yale University.
Before joining Octant, Michelle advised the asset management industry as an attorney at a large global law firm and worked in sales, training and marketing at Johnson & Johnson. She was shortlisted by Chambers in 2019 as a “Future Leader” for her commitment to promoting diversity and inclusion in the legal profession.
In addition to her law degree from Northwestern, Michelle received her MBA from Drexel University and a B.S. in health studies from Georgetown University. She volunteers for the regional alumni chapters of Georgetown University and Northwestern Pritzker School of Law.
Michelle enjoys food and sailing in the San Francisco Bay and further afield.
Naomi is a quantitative cell biologist by training. At Octant she's worn a few different hats including recruiting, establishing the OA program, building Octant HQ, demonstrating Octant's multiplexed platform technology, building cell engineering, and more.
Naomi received her PhD from the University of California, San Diego under Roy Wollman quantifying how cells communicate with one another to determine their position in relation to a wound. She's passionate about bringing science to the public through effective scientific communication and meaningful technological advances.
Outside of work you'll find Naomi spending time with her family and two dogs, hiking, running, and playing the piano.
Ramsey has spent his career building high-performance teams and technology companies. Before Octant, he was an executive at Dropbox, where he had roles leading Dropbox's communications, public policy & government affairs, human resources, legal, and trust & security teams. During that time Dropbox raised $1+ billion in capital, grew to more than 500 million users, and was the fastest SAAS company in history to reach $1 billion in revenue run rate. Prior to Dropbox, Ramsey was a Vice President at Google, where he managed Google's commercial legal groups and negotiated some of the internet industry's largest partnerships.
Before that, Ramsey was a technology attorney at Wilson Sonsini Goodrich & Rosati and a Lecturer at the University of Pennsylvania Law School. He has also done pro bono work representing indigent clients seeking political asylum. Ramsey received a B.S. in Chemical & Biochemical Engineering from Rutgers University and a J.D. from NYU.
Ramsey is a Board member at the Rutgers College of Engineering, and Represent.us, a grassroots political reform organization.
Ramsey grew up in Athens, Greece and Sparta, NJ. He enjoys hiking, camping, cooking over fire, punk music, and wandering through neighborhood art galleries.
Sri is a biologist that has helped build technologies, labs, and companies in synthetic biology, functional genomics, and bioinformatics over the last 20 years. He is passionate about developing more rational ways to understand and engineer biology.
Sri is a co-founder at Octant and an Associate Professor at UCLA in the Chemistry and Biochemistry Department, where his lab has worked on building large-scale ways of empirically exploring questions in protein biochemistry, human genetic variation, gene regulation, chemical biology, synthetic biology, and functional genomics.
Sri previously worked at the Wyss Institute and Harvard, where he built numerous technologies in gene synthesis, DNA information storage, gene editing, and large-scale multiplexed assays. He helped build Gen9, a gene synthesis company, as a member of the SAB and was the first employee of Joule Unlimited, an engineered algal biofuel company. He is a Searle Scholar (2015), NIH New Innovator (2014), and received his ScD in Biological Engineering at MIT and BS in Bioengineering at UC Berkeley.
Sri is originally from New Jersey, by way of Philadelphia and Kansas, and was born in North Carolina. He enjoys eating, getting outdoors, and traveling with his wife and two children.
Sri is a biologist that has helped build technologies, labs, and companies in synthetic biology, functional genomics, and bioinformatics over the last 20 years. He is passionate about developing more rational ways to understand and engineer biology.
Sri is a co-founder at Octant and an Associate Professor at UCLA in the Chemistry and Biochemistry Department, where his lab has worked on building large-scale ways of empirically exploring questions in protein biochemistry, human genetic variation, gene regulation, chemical biology, synthetic biology, and functional genomics.
Sri previously worked at the Wyss Institute and Harvard, where he built numerous technologies in gene synthesis, DNA information storage, gene editing, and large-scale multiplexed assays. He helped build Gen9, a gene synthesis company, as a member of the SAB and was the first employee of Joule Unlimited, an engineered algal biofuel company. He is a Searle Scholar (2015), NIH New Innovator (2014), and received his ScD in Biological Engineering at MIT and BS in Bioengineering at UC Berkeley.
Sri is originally from New Jersey, by way of Philadelphia and Kansas, and was born in North Carolina. He enjoys eating, getting outdoors, and traveling with his wife and two children.
Ramsey has spent his career building high-performance teams and technology companies. Before Octant, he was an executive at Dropbox, where he had roles leading Dropbox's communications, public policy & government affairs, human resources, legal, and trust & security teams. During that time Dropbox raised $1+ billion in capital, grew to more than 500 million users, and was the fastest SAAS company in history to reach $1 billion in revenue run rate. Prior to Dropbox, Ramsey was a Vice President at Google, where he managed Google's commercial legal groups and negotiated some of the internet industry's largest partnerships.
Before that, Ramsey was a technology attorney at Wilson Sonsini Goodrich & Rosati and a Lecturer at the University of Pennsylvania Law School. He has also done pro bono work representing indigent clients seeking political asylum. Ramsey received a B.S. in Chemical & Biochemical Engineering from Rutgers University and a J.D. from NYU.
Ramsey is a Board member at the Rutgers College of Engineering, and Represent.us, a grassroots political reform organization.
Ramsey grew up in Athens, Greece and Sparta, NJ. He enjoys hiking, camping, cooking over fire, punk music, and wandering through neighborhood art galleries.
Dr. Jason Kelly is the co-founder and CEO of Ginkgo Bioworks, the leading horizontal platform for cell programming. Headquartered in Boston, Ginkgo is a synthetic biology company that enables customers across industries to program cells as easily as we can program computers. Ginkgo supports the development of applications ranging from vaccine manufacturing and new pharmaceutical modalities to fragrances, sustainable dyes, and biosynthetic cannabinoids, as well as pandemic response and biosecurity tools including K12 pooled testing for COVID-19. Ginkgo is listed on the New York Stock Exchange under the ticker $DNA. Prior to Ginkgo, Jason received B.S. degrees in Chemical Engineering and Biology and a PhD in Biological Engineering all from MIT.
Jorge Conde is a General Partner at Andreessen Horowitz where he leads investments at the cross section of biology, computer science and engineering.
Prior to joining a16z, Jorge served as Chief Strategy Officer for Syros (NASDAQ: SYRS), which is advancing a new wave of medicines that control expression of disease-driving genes to treat cancer and other diseases. He previously served as the company's Chief Financial Officer and Chief Product Officer, leading the platform strategy for Syros' novel gene regulation technology. Jorge also cofounded Knome, a human genome interpretation company acquired by Tute Genomics in 2015. Earlier in his career, Jorge worked in marketing and operations at MedImmune and as a biotechnology investment banker at Morgan Stanley.
Jorge holds an MBA from Harvard Business School, an MS from the Harvard-MIT Division of Health Sciences and Technology, and a BA in Biology from Johns Hopkins University.
Jorge was named one of the top 35 young innovators in the world by the MIT Technology Review and is a Henry Crown Fellow of the Aspen Institute and a member of the Aspen Global Leadership Network. He previously served on the board of the Museum of Science, Boston.
Jorge serves on the board of the following Andreessen Horowitz portfolio companies: Asimov, Camp4, EQRx, Komodo Health, Octant Bio, Tmunity, and twoXAR.
Mark Murcko was an early leader in structure-based drug design and has directly contributed to nine marketed drugs spanning HIV, HCV, cystic fibrosis, and glaucoma. He is a Founder, Board member, and was the interim CSO at Relay Therapeutics. More recently he was the founding CSO and remains a board member and advisor to Dewpoint Therapeutics. In addition, Mark is a senior lecturer in the Department of Biological Engineering at MIT, and has served on numerous scientific advisory boards and corporate boards of directors for a diverse range of organizations. Mark was chief technology officer and chair of the SAB of Vertex Pharmaceuticals and was responsible for the identification, validation and implementation of disruptive technologies across R&D. Mark is a co-inventor of the HCV protease inhibitor Incivek (telaprevir), as well as Agenerase (amprenavir) and Lexiva (fosamprenavir), Vertex’s two marketed drugs for the treatment of HIV. In addition, he guided the early efforts of Vertex’s cystic fibrosis program that has produced four marketed drugs.
Prior to Vertex, Mark worked at Merck Sharpe & Dohme, where he helped discover multiple clinical candidates, including Dorzolamide, a carbonic anhydrase inhibitor for the treatment of glaucoma which was commercialized in two approved drugs, Trusopt and Cosopt. Trusopt was the first medicine in history to come from a structure-based drug design program. He is a member of the Board of Trustees of the GRC and the Board of Advisors of the Boston Museum of Science. He is a co-inventor on more than 50 issued patents and has co-authored more than 85 scientific articles. Mark holds a Ph.D. in organic chemistry from Yale University.
George Petrocheilos is a Co-Founder & Managing Partner of Catalio Capital Management, LP. He is primarily responsible for managing the firm and for making investments in breakthrough biomedical technology companies founded by world renowned scientist-entrepreneurs. He also serves on the Nexus Investment Committee and the firmwide Management Committee.
In addition to Octant, George currently serves on the Boards of Haystack Oncology, Spiral Therapeutics, MindX, DNA Script, Sisu Global Health, Inc., WindMIL Therapeutics, and LifeSprout. He also serves as President of the HealthCor Catalio Special Purpose Acquisition Corp. (NASDAQ: HCAQ) and on the Board of Directors of the family-owned PETKA S.A., a construction & development company headquartered in Athens, Greece.
Prior to founding Catalio, he was a General Partner at Camden Partners Holdings, LLC, a private equity firm, where he focused on making biomedical technology investments.
George serves on the Board of Trustees of the Kennedy Krieger Institute, the Baltimore School for the Arts and the Johns Hopkins Center for Financial Economics. He also serves on the Investment Advisory Committee of the Halcyon Incubator in Washington D.C. and the MIT Enterprise Forum. George’s honors include Baltimore Business Journal’s 2019 ‘Tech 10’ leaders in Maryland, BBJ’s 2013 “40 Under 40 Business Leaders” and The Hill’s 2013 “Washington D.C. Rising Stars”, among others.
George earned his B.A. degree in Financial Economics from the Johns Hopkins University.
We're a group of scientists and builders driven to find new therapeutics for complex diseases.
Alan is research associate focused on furthering Octant’s deep mutational scanning capabilities.
Alan obtained his B.S. from Duke University where he double-majored in Biophysics and Quantitative Economics. At Duke, he worked in Charlie Gersbach’s lab harnessing CRISPR-Cas9-based epigenetic editors to study force-modulated transcriptional regulation mechanisms directing how cells respond to distinct mechanical niches within the body. For his undergraduate thesis, he developed fluorescent reporter systems to measure enhancer activity within single cells using high-resolution microscopy and flow cytometry.
Alan grew up in Shanghai, China and Detroit, MI. Outside of work, he enjoys spending time with friends, playing soccer, eating great food, and watching Arrested Development.
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Albert utilizes different automation technologies to ensure quality data generation from many of Octant’s scientific processes. This includes integrating specific assays onto automation, onboarding tools for efficient execution, and supporting an environment for seamless research operations.
Albert has had several different experiences at different biotechs after graduating with his B.S. in Biochemistry and Philosophy from Wisconsin-Madison. He started off as an Associate Scientist at Abbott Laboratories but moved to California where he was a part of Transcriptic (now Strateos) and most recently insitro.
In his free time, Albert enjoys watching the NBA and trying out different banana bread recipes.
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Alex is part of the Strategy team at Octant, with a background in neuroscience and molecular biology. She is passionate about using advancements in experimental tools and knowledge to help identify novel therapeutic strategies for patient populations with a high unmet need.Alex has a Ph.D. from John’s Hopkins, studying translation regulation in neurons, and later completed postdoctoral training in the Doudna lab, working between UC Berkeley and UCSF. Prior to joining Octant, she was Director of Asset Acquisition BridgeBio Pharma, focusing on sourcing, evaluating, and bringing in new therapeutic programs to the company pipeline. Outside of work, Alex spends most of her time hiking, traveling, reading, and trying to keep up with her overexcited dog.
Amen AM, Loughran RM, Huang CH, Lew RJ, Ravi A, Guan Y, Schatoff EM, Dow LE, Emerling BM, & Fellmann, C (2022). Endogenous spacing enables co-processing of microRNAs and efficient combinatorial RNAi Cell Reports Methods 2, e100239
Amen AM, Fellmann C , Soczek KM, Ren SM, Lew RJ, Knott GJ, Park JE, McKinney AM, Mancini A, Doudna JA, & Costello JF (2021). Cancer-specific loss of TERT activation sensitizes glioblastoma to DNA damage. PNAS 118, e2008772118
IGI Testing Consortium. Blueprint for a pop-up SARS-CoV-2 testing lab (2020). Nature Biotechnology, 38, 791-797
Mancini A, Xavier-Magalhaes A, Woods WS, Nguyen KT, Amen AM, Hayes JL, Fellmann C, Gapinske M, McKinney AM, Hong C, Jones LE, Walsh KM, Bell RJA, Doudna JA, Costa BM, Song JS, Perez-Pinera P, & Costello JF (2018). Disruption of the beta1L Isoform of GABP Reverses Glioblastoma Replicative Immortality in a TERT Promoter Mutation-Dependent Manner. Cancer Cell 34, 513-528
Amen AM, Ruiz-Garzon CR, Shi J, Pham D, Subramanian M, & Meffert MK (2017). A rapid inductionmechanism for Lin28a in trophic responses. Molecular Cell 65, 490-503
Alice is an experienced business development & licensing professional with a background in law & management consulting. She is passionate about promoting innovation through collaboration among investors, biotech start-ups and big pharma to bring medicines to patients.
Alice has a proven track record in leading complex, high impact transactions across multiple technology platforms and therapeutic areas for pharmaceutical and biotech companies. Before Octant, Alice was at Genentech/Roche as a Business Development Project Leader in Pharma Partnering and Asst. General Counsel in Legal supporting Pharma Partnering, Mergers & Acquisitions, and Pharma Technical External Collaborations. Prior to Genentech, Alice was transactional counsel at the law firm Wilson Sonsini Goodrich & Rosati in Palo Alto and supported key partnerships and mergers and acquisitions for large pharmaceutical and small biotech companies. Alice received her B.A. from Stanford University in Human Biology and J.D. from Columbia University School of Law.
Alice aspires to improve her tennis game, conquer her fear of downhill mountain biking, and (re)learn how to play Grieg’s Piano Concerto in A minor.
Bryan joined Octant as a Research Associate and will assist in running and optimizing Octant's technology. He recently received his B.S. in Microbiology, Immunology, and Molecular Genetics with a minor in Bioinformatics from UCLA. There, he took part in a virology lab where he focused on characterizing genetic and genomic relationships between bacteriophages infecting separate host genera.
In his free time Bryan enjoys trying new foods, learning about languages, hiking, and programming.
Carter is a molecular biologist with a background in molecular diagnostics, assay development, and genetic engineering of mammalian cells.
He received his M.S. in Clinical Laboratory Sciences from Rush University Medical Center and completed his clinical training at Northwestern Memorial Hospital. He is an ASCP certified molecular biologist and worked as a clinical laboratory scientist in molecular diagnostics at the University of Illinois Medical Center and the Denver VA Medical Center. He received his Ph.D. in Cancer Biology from the University of Nebraska Medical Center then completed his postdoctoral training at UCSF. He worked as a scientist at Guardant Health before joining Octant in 2021.
Outside of the lab, Carter enjoys spending time outdoors with his family and dog.
FOXM1: A Multifunctional Oncoprotein and Emerging Therapeutic Target in Ovarian Cancer.
Liu C, Barger CJ, Karpf AR. Cancers (Basel). 2021 Jun 19;13(12):3065.
Co-regulation and function of FOXM1/RHNO1 bidirectional genes in cancer. Barger CJ, Chee L, Albahrani M, Munoz-Trujillo C, Boghean L, Branick C, Odunsi K, Drapkin R, Zou L, Karpf AR. Elife. 2021 Apr 23;10:e55070.
Pan-Cancer Analyses Reveal Genomic Features of FOXM1 Overexpression in Cancer. Barger CJ, Branick C, Chee L, Karpf AR. Cancers (Basel). 2019 Feb 21;11(2):251.
Genetic determinants of FOXM1 overexpression in epithelial ovarian cancer and functional contribution to cell cycle progression. Barger CJ, Zhang W, Hillman J, Stablewski AB, Higgins MJ, Vanderhyden BC, Odunsi K, Karpf AR. Oncotarget. 2015 Sep 29;6(29):27613-27.
https://scholar.google.com/citations?user=gHskM6sAAAAJ&hl=en
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Connor is a synthetic and systems biologist with a background in mammalian gene regulation and functional genomics. He is currently developing new screening approaches to expand Octant's drug discovery capabilities.
Before joining Octant, Connor completed his PhD in Bioengineering at Stanford University in the lab of Dr. Lacramioara Bintu. The bulk of his thesis work focused on the large-scale discovery and characterization of viral proteins that can affect transcription in human cells.
Outside of Octant, Connor enjoys making music, drawing, painting, playing board games, and playing pickleball.
Dynamic spreading of chromatin-mediated gene silencing and reactivation between neighboring genes in single cells. Lensch S, Herschl MH, Ludwig CH, Hinks MM, Mukund A, Fujimori T, Bintu L (2022). eLife.
High-throughput functional characterization of combinations of transcriptional activators and repressors. Mukund AX, Tycko J, Allen SJ, Robinson SA, Andrews C, Ludwig CH, Spees K, Bassik MC, Bintu L (2022). bioRxiv.
High-Throughput Discovery and Characterization of Viral Transcriptional Effectors in Human Cells. Ludwig CH, Thurum AR, Yang KJ, Tycko J, Bassik MC, Glaunsinger BA, Bintu L (2022). bioRxiv.
Large-scale mapping and systematic mutagenesis of human transcriptional effector domains. DelRosso N, Tycko J, Suzuki P, Andrews C, Aradhana FNU, Mukund A, Liongson I, Ludwig CH, Spees K, Fordyce P, Bassik MC, Bintu L (2022). bioRxiv.
Conor is a protein biochemist and molecular biologist by training. He is currently employing Octant's multiplex capabilities toward the optimizing and scaling of our Deep Mutational Scanning (DMS) approach, with the goal of harnessing this technology as a tool for rational genetics- and structure-driven drug design.
Conor received his PhD from the University of California, San Francisco in the lab of Adam Frost. There he worked on the biochemical and structural determinants of Ribosome-associated Quality Control (RQC). Prior to this he did his undergraduate work at UC Berkeley, where he worked under Liam Holt studying the evolutionary plasticity of kinase specificity and poly-glutamine repeat expansions in yeast. Before graduate school Conor also spent some time at the University of Copenhagen in Rune Linding's lab studying the proteomic effects of cancer therapies. Conor thrives working at the intersection of many disciplines and is fascinated with how biology emerged in the universe. He believes mechanistic dissection of molecules in the context of mutational plasticity can help tackle some of the most complex problems in biology and disease.
Outside of work you'll find Conor traveling, skiing, scouting new breweries, playing tennis, experimenting with hot sauce recipes, and exploring unusual agave spirits.
Rapid deployment of SARS-CoV-2 testing: The CLIAHUB. Crawford ED, et al. (2020). PLoS Pathogens.
Curt is a chemical engineer with a background in analytical biochemistry and metabolic engineering. He earned his Ph.D. in chemical engineering at MIT, completed post-doctoral studies at UC Berkeley, and was an early employee at Ginkgo Bioworks for several years. After returning to the west coast in 2014, he led Stanford ChEM-H's Metabolic Chemistry Analysis Center, before joining Octant in 2020.
After hours you will find hanging out with this family, at home. After the pandemic ends, troubles will melt like lemon drops and sometimes Curt might get high above the chimney tops, or at least farther away from his house.
Dan is a veteran in the biotech industry and has worked for companies ranging in size from tiny startup to big pharma. Prior to joining Octant, he was CFO at Kriya Therapeutics where he started and built the finance and HR organizations. Before that, Dan served as VP Finance at Portola Pharmaceuticals and was an instrumental member of the leadership team that transformed the company from a private, development stage, US company to a public, commercial stage company which launched two products in the US and expanded into Europe. He has also worked at Johnson & Johnson and Gilead Sciences, holding positions of increasing responsibility. Dan started his career as a Research Associate at SyStemix, Inc. where he realized that though he loved science, he was not a scientist, and so transitioned to a career in Finance.
Dan received a B.A. in Molecular Cell Biology from the University of California, Berkeley and an MBA from the University of Southern California.
When not at Octant, Dan enjoys spending time with family, traveling the world, and exploring museums floor by floor and exhibit by exhibit.
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Danny Tagaloa is in Laboratory Operations for Octant. For over a decade, he led the Facilities group for Plexxikon Inc. and contributed to the success of two market drugs, Zelboraf and Pexidartinib. Danny spent part of his childhood in American Samoa and enjoys the outdoors to garden, camping, or going fishing. In his spare time, he loves spending time with his family, including his grandchildren.
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Diane is a genomicist who leads Octant’s Deep Mutational Scanning team. She is passionate about elucidating the genetic contributors to human disease and harnessing this information to improve treatments.
Diane was previously a Staff Scientist (Principal Investigator) at Lawrence Berkeley National Lab, where she co-led a research group that used genomics technologies and in vivo genome engineering in mice to understand the functions of noncoding DNA sequences in development, disease, and evolution. She received her PhD in Genome Sciences from the University of Washington, where she was the recipient of a National Institutes of Health Kirschstein Predoctoral Fellowship, and her BA in Biology from the University of Chicago. She has co-authored 50+ publications/preprints to date on mammalian gene expression regulation, human genetics, genomics technologies, and plant biology.
Diane is an avid reader who enjoys hiking, bicycling, and playing board games with her family.
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Dom is a platform runner at Octant’s Multiplexed Assay Platform team. His experience in Biotechnology stems from a variety of local companies and organizations including Bayer, Zymergen, Biotech Partners, and Laney’s Biomanufacturing Program. He is especially passionate about developing new systems to improve workflows and processes.
Dom formerly worked as a college counselor at the YMCA Teen Center where he supported hundreds of students with applying and enrolling into higher education. He hopes to further diversify the STEM world by fostering opportunities geared towards underrepresented youth.
Outside of the lab, Dom enjoys long walks, catching the sunset, and adventuring with friends.
Drake is a Research Associate at Octant.
Prior to Octant, Drake established a laboratory program and served as lab manager at Alibi Ale Works, Lake Tahoe. He also interned at the University of Colorado’s Anschutz Medical Campus, where he investigated different drugs candidates for difficult-to-treat melanomas.
Drake received his B.S. in Biomedical Microbiology and Biology from the University of Wisconsin – La Crosse. There, he established four different research projects, including bioelectromagnetism via magnetotactic bacteria and acetaminophen metabolite toxicity in aquatic systems.
In his free time, Drake enjoys playing outside, writing music, and trying new things!
Eddie Sanchez is the Executive Assistant to Sri Kosuri and Ramsey Homsany. He brings 15 years of assistant experience to Octant and has supported many established C-level executives from Los Angeles and San Francisco.
Eddie values building relationships with teammates and making a positive impact on work culture. He hopes to be an extension of his executive team while helping uphold the amazing Octant energy.
Originally from San Jose, Eddie spent 17 years in LA and now resides in San Francisco. He’s truly a California kind of guy.
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Eden is an apprentice on the DMS team. Prior to joining Octant, Eden studied Biology at Scripps College. During her time as an undergrad, she conducted research in Dr. Finseth’s lab, where she examined reproductive protein evolution in Mimulus guttatus. Eden also did research in Dr. Tang’s lab, where she studied the roles of key S. pombe protein kinases in gene expression and cell cycle control. In her free time, Eden enjoys spending time outdoors, working out and eating delicious food.
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Edward received his B.A. in Chemical and Physical Biology from Harvard University. At Harvard, he worked in a membrane protein structural biology lab studying the differences in metal transport among the NRAMP family.
Outside of lab, Edward enjoys martial arts, visiting parks, and drinking tea.
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Emma is an apprentice on the Synthetic Biology team. Prior to joining Octant, she studied Molecular Environmental Biology at UC Berkeley, where she worked in the Wang Lab, exploring the evolutionary relationship between climate and Anolis Cristatellus lizard tail phenotypes. Emma also spent time in the the Ren Lab at UCSD, where she conducted a CRISPRi screen in induced pluripotent stem cells to identify pro-growth enhancers. Most recently, Emma interned at Pow Bio, where she helped set up fermentation reactions in bioreactors.
Outside of Octant, Emma spends her time finding new running spots, playing the piano and picking up random hobbies (most recently, juggling).
Eric is a molecular biologist with a background in synthetic biology and functional genomics. He completed his Ph.D. in Molecular Biology at UCLA in the lab of Sriram Kosuri. His graduate work focused on constructing a massively parallel reporter assay for mapping olfactory receptor-odorant interactions and performing a deep mutational scan of the Beta-2 Adrenergic Receptor. Outside of the lab you can find him playing basketball, sailing, or going to shows.
J. S. Bloom, L. Sathe, C. Munugala, E. M. Jones, M. Gasperini, N. B. Lubock, F. Yarza, E. M. Thompson, K. M. Kovary, J. Park, D. Marquette, S. Kay, M. Lucas, T. Love, A. Sina Booeshaghi, O. F. Brandenberg, L. Guo, J. Boocock, M. Hochman, S. W. Simpkins, I. Lin, N. LaPierre, D. Hong, Y. Zhang, G. Oland, B. J. Choe, S. Chandrasekaran, E. E. Hilt, M. J. Butte, R. Damoiseaux, C. Kravit, A. R. Cooper, Y. Yin, L. Pachter, O. B. Garner, J. Flint, E. Eskin, C. Luo, S. Kosuri, L. Kruglyak, V. A. Arboleda, Massively scaled-up testing for SARS-CoV-2 RNA via next-generation sequencing of pooled and barcoded nasal and saliva samples. Nat Biomed Eng. 5, 657–665 (2021).
Erin is a protein biochemist/biophysicist with a background in developing high-throughput screening platforms.
Before joining Octant, she completed her Ph.D. in Chemistry & Chemical Biology at UCSF in Jaime Fraser’s lab. Her thesis work broadly focused on the functional characterization of enzyme conformational states using deep mutational scanning, in vitro kinetics, and structural techniques.
Outside of the lab, Erin loves to get outside to bike, run, hike, and backpack.
Galen is an organic chemist who designs high-throughput robotic chemistry pipelines. He earned his Ph.D. in organic chemistry at MIT, completed post-doctoral studies at Harvard Medical School and Massachusetts General Hospital. He worked as a chemist at Stemcentrx and at Carmot Therapeutics, before joining Octant in 2020.
In his free time he enjoys sailing and going for bike rides with his kids.
Hannah Shen is passionate about developing novel therapies for diseases with a high unmet need. She joined Octant Bio as VP of Strategy to formulate corporate and R&D strategies to engineer impactful drugs for patients.
Prior to joining Octant, Hannah was VP of the Asset Acquisition team at BridgeBio, leading a tight-knit five-person team responsible for identifying, diligencing, and bringing in new therapies. She was involved in the creation of 15+ new programs and shaped the inception of BridgeBio X. Before then, Hannah was employee number 17 at software company Benchling, where she led initial efforts to develop marketing and business development strategy, leading to 8x revenue growth over the first 18 months and Benchling’s first two deals with top 5 pharma companies.
Hannah received her PhD in molecular biology from Harvard University, where she studied the neuronal basis of chemotaxis in C. elegans. Her work led to a co-first-author publication in Nature. She grew up in Taipei, Taiwan, and loves hiking, trying new foods, cats, and volleyball.
Papers
https://www.nature.com/articles/s41592-018-0233-6
Henry is a structural and molecular biologist. As a scientist, Henry develops technologies to enable the rapid development of synthetic biology tools at Octant.
Henry received his PhD in Biochemistry from UCLA, where he studied the molecular architecture and structure of the telomerase enzyme. Prior to graduate school, he was the 2nd hire at Inhibrx, where he helped start the lab and develop antibodies and antibody generation techniques.
Henry received his B.S. and M.S. at UCSD in molecular biology where he did research in protein engineering and evolution, and bioinformatics. Outside of work his hobbies include Brazilian Jiu Jitsu, sailing, and rock climbing.
Idriss is a seeker of truth, solutions, joy, peace, and forever happiness on the ops team. Born and raised in Douala, Cameroon, he transitioned to the U.S to pursue his education. From the year round tropical sun of Cameroon, he first landed in the frigid arctic temperatures of Minnesota where he graduated from Southwest Minnesota State University with a Bachelor's in Business Administration and Marketing. Longing for more gelid temperatures, he moved to Syracuse University where he completed a Master of Science in Finance. His hobbies are working out, adventurous road trips and he hates long walks on the beach.
Janet is an Executive Assistant (EA). Prior to Octant, she was an EA at Dropbox for 7 years supporting over 40+ managers, VPs, and C-level executives, including the CEO & COO, during this time. She also has extensive experience in hospitality and restaurant management, as well as event planning, dating as far back as 2002.
Janet is originally from Los Angeles. She enjoys crossing things off a to-do list, making things look pretty, and catching Pokémon (on Pokémon Go) with her two kids.
Jeff has a background in biophysics and cell biology and has worked in areas related to microscopy and sequencing. At Octant he’s helping to further push the performance and scale of the company’s core platform technology. Jeff received his PhD from the University of California, Berkeley where he studied nucleocytoplasmic transport and then investigated how yeast respond to nutrient deprivation during a postdoc at the ETH Zurich in Switzerland.
Prior to joining Octant, he was a scientist at Zymergen.
Besides tackling exciting problems in biology, Jeff enjoys hiking and playing ultimate frisbee, and he’s also an instructor at the Berkeley Kendo Club.
An enthusiastic experimentalist and leader, Jennifer joins Octant as a Scientist on the Synthetic Biology team.
Jennifer spent the past 5 years at Zymergen, where she had the opportunity to contribute both scientifically and as a team leader. She initially worked on developing high-throughput methods for genetic engineering of microbes using robotics. She then moved to the Automation team, where she led the Automation Applications team and was part of the core Automation leadership team. This work involved people management, building light but effective processes around cross-team communication, prioritizing work requests from all of the R&D and Ops lab departments across Zymergen, and creating tools for the team such as career ladders and team goals. Prior to Zymergen, Jennifer worked briefly at Molecular Devices, where she supported their high content imaging system (IXM). Jennifer did her postdoc work at Institut Pasteur in Paris, France, in the lab of Jost Enninga, where she worked on better understanding host factors involved in Salmonella infection of the human gut. She did her PhD work at UCSD with Kit Pogliano, using imaging and biochemical techniques to study sporulation in Bacillus subtilis.
In her free time, Jennifer is an avid rock climber. Her favorite places to climb are Red Rock, NV and Siurana, Spain, where she and her husband have spent many vacations. More recently, she has spent less time climbing and more time with her daughter, Hazel, who was born in May 2020 and is super fun to get to know as she can express more and more each day.
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Jessica is a geneticist and molecular biologist with a background in platform development and rare disease therapeutics. She earned her PhD in Genetics at UC Davis studying the molecular mechanism of DNA double-strand break repair in the lab of Neil Hunter. She then returned home to the Bay Area to undertake her postdoctoral study. At UCSF in David Toczyski’s lab, she studied how the DNA Damage Response surveillance machinery regulate cellular metabolism in response to DNA damage. Since then, she has worked on discovering and developing therapeutics for rare diseases across several drug modalities. From small molecule screening at Perlara to protein engineering for enzyme replacement therapies at Codexis and more recently developing nucleic acid therapeutics at Ultragenyx. She is excited to continue her passion for rare at Octant.
When she’s not in the lab, Jessica enjoys trying out new recipes, exploring new places, and spending time with her playful cat.
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Jillian is a medicinal chemist with a background in synthetic organic chemistry. She received her B.A. from New York University in Chemistry. She went on to earn her Ph.D. in 2018 at New York University under the advisement of Professor K. A. Woerpel working on the development of new synthetic reactions involving strained cyclic alkenes. Prior to joining Octant, she served as a medicinal chemist at Merck Research Laboratories in South San Francisco, CA in both the internal and external discovery chemistry groups. She has co-authored over ten publications and patents.In her free time, Jillian enjoys riding her motorcycle or bicycles, hiking, and exploring dive bars in the Bay Area and beyond.
Jimin is a synthetic and systems biologist with a background in developing high-throughput functional assays to explore bacterial gene regulation.
Prior to joining Octant, he finished his PhD in Systems biology at Columbia University with Harris Wang. His thesis work focused on mapping sequence function relationships of bacterial sigma factors using saturation mutagenesis and dissecting regulatory mechanisms of cis-regulatory sequences in high-throughput with promoter libraries.
Outside the lab he enjoys playing boardgames, finding new hobbies to fall into, eating and drinking.
Johan has spent the last 7 years in biotech working with metabolic disease and weight loss. As an employee of Carmot Therapeutics Johan spearheaded the in vivo pharmacology effort, establishing all in vivo models necessary to push an in house project from inception to Phase 1 clinical trials.
Johan spent his early education getting an MSc in cell and molecular pharmacology at Lund University (1999), with a focus on intracellular movements of GPCRs. Johan followed up his MSc with a PhD from Lund University (2007) extending his studies from his undergraduate degree in GPCR pharmacology - exploring several families of GPCRs. During his postdoctoral fellowship at UCSF (2007-2013) Johan applied his findings from his MSc and PhD to animal models of addiction and tolerance, learning crucial methodology in physiological and behavioral readouts in rodent models, drug delivery and survival surgery techniques.
Along the way Johan has taught medical and biomedical students (lecture series), trained research students, technical staff and scientists, and managed technical staff and scientists in cross functional research teams in both academia and biotech.
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Jonathan is a biochemist and molecular biologist with a background in cell cycle regulation and biotherapeutic discovery. He is currently deploying Octant’s high-throughput and multiplex technologies to understand the pharmacology of the small molecules we discover.
He received his BA from Berkeley in Molecular Biology & Biochemistry and a PhD in Biochemistry from UCSF with David O. Morgan. His thesis focused on understanding how Cyclin-dependent kinases regulate transcription through multisite phosphorylation mechanisms.
Outside of the lab, Jonathan enjoys cooking for friends and hunting for new bottles at local wineries and importers.
Jordan is a member of the SynBio Apprentice Fall '21 cohort. She will graduate with a B.A. in molecular biology from Scripps College May 2021.
As an undergraduate she worked in a protein engineering lab to create better luciferases for use in in vivo multicomponent bioluminescence imaging (BLI). She also worked on computational projects, like analyzing structures of unannotated small open reading frame (sm-ORF) encoded proteins en masse and using Rosetta to predict beneficial mutations to introduce into luciferases for BLI applications.
Outside of science her interests include environmentalism, stand-up comedy, and serenading her dog (to no avail) on the piano.
Josh is a geneticist and computational biologist. He is interested in understanding the genetic basis of complex traits. He develops technology and computational methods to better understand the relationship between genetic variation and trait variation in populations with a primary focus on yeast genetics. His recent work involves high-throughput variant engineering with CRISPR/Cas9 to identify causal genetic variants as well as the development of new experimental and computational methods to comprehensively identify the heritable genetic factors underlying gene expression differences and other complex traits in very large populations. After studying Neuroscience at UCLA as an undergraduate, Josh earned his PhD in Molecular Biology from Princeton with a certificate in quantitative and computational biology.
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Joshua is an Octant Apprentice working with the Multiplexed Assay Platform. He completed his Bachelor's in Biological Engineering at MIT. During his undergrad, he worked with the Jin lab at the Scripps Research Institute to investigate sex differences in neurodevelopment using a combination of single cell sequencing, spatial transcriptomics, and fluorescent imaging. Outside of the lab, Joshua enjoys playing board games, getting some California sun on his bike, or reading random articles on his news feed.
Josh is an engineer passionate about working at the intersection of biology, statistics, and computation. He was previously the Head of Bioinformatics at Invitae, where he built and supported a team responsible for delivering methods and software for the genomic analysis of millions of patients per year. He has led technical efforts ranging from the design and validation of novel statistical techniques to architecting enterprise software systems.
Josh received his PhD in Computer Science at UC Berkeley in Yun Song's group, where he worked on computationally tractable approaches to incorporating recombination in population genetic models. He received a BS in Physics and Computer Science at the University of Illinois.
Outside of work, Josh enjoys riding vintage bicycles, minimalist running, rock climbing, and cooking for his wife and two sons.
Truty, R., Paul, J.S., Kennemer, M., Lincoln, S.E., Olivares, E., Nussbaum, R.L., Aradhya, S. Prevalence and properties of intragenic copy-number variation in Mendelian disease genes. Genetics in Medicine, 21 (2019) 114-123.
Lincoln, S.E., Truty, R., Lin, C, Zook, J.M., Paul, J.S., Ramey, V.H., Salit, M., Rehm, H.L., Nussbaum, R.L.,Lebo, M.S. A Rigorous Interlaboratory Examination of the Need to Confirm Next-Generation Sequencing-Detected Variants with an Orthogonal Method in Clinical Genetic Testing. The Journal of Molecular Diagnostics, 21 (2019) 318-329.
Westbrook, M., Kvitek, D., Gafni, E., Paul, J.S., Kennemer, M., Winder, T., Shieh, P. Prevalence and properties of intragenic copy-number variation in Mendelian disease genes. Neurology, 90 (2018)
Steinrücken, M., Paul, J.S., and Song, Y.S. A sequentially Markov conditional sampling distribution for structured populations with migration and recombination. Theoretical Population Biology 87 (2013) 51-61.
Paul, J.S. and Song, Y.S. Blockwise HMM computation for large-scale population genomic inference. Bioinformatics, 28 (2012) 2008-2015.
Nielsen, R., Paul, J.S., Albrechtsen, A., and Song, Y.S. Genotype and SNP calling from next-generation sequencing data. Nature Reviews Genetics 12 (2011) 443-451.
Paul, J.S., Steinrücken, M., and Song, Y.S. An accurate sequentially Markov conditional sampling distribution for the coalescent with recombination. Genetics 187 (2011) 1115-1128
Paul, J.S. and Song, Y.S. A principled approach to deriving approximate conditional sampling distributions in population genetics models with recombination. Genetics 186 (2010) 321-338.
Justin is a member of the SynBio Apprentice Fall '21 cohort. Prior to joining Octant, Justin attended Johns Hopkins University and graduated with a Bachelor of Science in Molecular and Cellular Biology. During his undergraduate career, Justin worked in the Davis Lab in the Bloomberg School of Public Health where he explored the relationship between single-cell bacterial growth and stress in murine and microfluidic systems. Justin also founded Agara Bio, a student-led community wet-lab at Johns Hopkins University, and received the Emerging Leader Award for Undergraduates.
Outside of the lab, Justin enjoys playing the guitar and (more recently) getting absolutely pitted.
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Before joining Octant, Kaela worked as an Office Manager at Keegan & Coppin. There, they oversaw the office, assisted the agents with leases, graphic design and marketing. Before that, Kaela was a Senior Administrative Assistant at Verisk Analytics in the Finance department where, along with administrative duties, they assisted in accounting through billing, invoicing, and office expenses and budgeting.
Outside of work, Kaela enjoys boardgames, dungeons and dragons, and digital art.
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Kiran is a software engineer at Octant on the compute team. Prior to starting his career as a software engineer, Kiran studied Computer science and Economics as an undergrad at UC Berkeley. Outside of work, Kiran is avid sports fan and supports the Las Vegas Raiders and Golden State Warriors.
Kyle is a quantitative cell biologist with a background in proteomics, next-generation sequencing, and CRISPR screening.
He finished his Ph.D in Chemical and Systems Biology at Stanford University with Mary Teruel where he studied the impacts of gene expression noise on signaling and metabolic pathways, and cellular decisions.
Outside of work, Kyle enjoys travel, the outdoors, and playing with his dog.
Leon is a molecular geneticist. He builds platforms to engineer biology and designs the sensors that read out the cellular response to the chemical world.
Leon did his post doctoral work in Karsten Weis's lab at UC Berkeley where he developed tools to measure the dynamics of the transcriptome and applied these tools to uncover the relationship between how proteins are made and how long the transcriptome persists in the cell. Prior to this, he did his doctoral work in Angelika Amon's lab at MIT where he elucidated how cells translate spatial information into chemical signals in the context of mitotic checkpoints. It was also at MIT where in Drew Endy's lab Leon helped to construct the first designed synthetic genome and organism.
Leon rock climbs, enjoys mixing up cocktails and wrangling his cats.
Refactoring bacteriophage T7. Chan LY, Kosuri S, Endy D. Mol Syst Biol. 2005. 1:2005.0018.
Lizvette joined Octant as a Research Associate. She currently helps operate Octant’s sequencing pipeline. Lizvette received her B.S. in Biology with a concentration in Biomedical Sciences from CSU Sacramento. There, she was part of a molecular ecology lab where she focused on looking at how changes in gene expression affect individual and population differentiation in marine organisms.
Prior to Octant, Lizvette worked as a Molecular Biology RA where she screened for genetic mutations in multiple cell lines using Next Generation Sequencing.
Outside of the lab, you can find Lizvette chilling with her 2 cats & 1 dog, traveling, or just taking a nap.
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Marco is a software engineer with over two decades of experience in cheminformatics, bioinformatics and enterprise software development.He earned his PhD in physics at Syracuse University and completed postdoctoral studies at UCLA. He started his career at Symyx Technologies (now Biovia) working on cheminformatics, LIMS and ELN. In the past decade Marco worked in early startups and larger companies, ranging from clinical human genetics to synthetic biology. Marco joined the Compute team at Octant in early 2023. In his spare time Marco enjoys sailing, cooking, singing and spending time with his wife and two teenage children.
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Michael previously worked as a microbiologist in R&D for Roche Molecular Systems for 12 years. He worked on various assays, including the Cobas MPX & DPX system, as well as the HPV genotype test for women. He received a B.A. in Microbiology, with a minor in chemistry, at the University of Florida. Michael took a break from science to start his own food truck/catering business known as the GrilledCheezGuy in the Bay Area. His business lasted for 10 years and had two store locations & a brand that even made it on television! Now Michael has become a member of the Octant Operations team. Outside of the lab, Michael enjoys camping, fishing, being a foodie, and traveling the world.
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Michael joined us as a jack-of-all-trades to facilitate Discovery Logistics. Prior to joining Octant, he has served as VP Sample Management at Evotec, and Head of HTS, Automation and Compound Management at Elan Pharmaceuticals. He received a PhD in Biochemistry & Pathology from the University of Melbourne in his home country of Australia before moving to the US for a postdoc at LBNL. He has over 30 co-authored publications, and presented as a subject matter expert on Sample Management and Lab Automation processes within the industry.
In his spare time Michael enjoys collecting, riding and racing motorcycles. He currently owns more of them than his wife deems necessary.
Before joining Octant, Michelle advised the asset management industry as an attorney at a large global law firm and worked in sales, training and marketing at Johnson & Johnson. She was shortlisted by Chambers in 2019 as a “Future Leader” for her commitment to promoting diversity and inclusion in the legal profession.
In addition to her law degree from Northwestern, Michelle received her MBA from Drexel University and a B.S. in health studies from Georgetown University. She volunteers for the regional alumni chapters of Georgetown University and Northwestern Pritzker School of Law.
Michelle enjoys food and sailing in the San Francisco Bay and further afield.
Morgan joined the team as an Octant Apprentice and is now a Research Associate on the SynBio team.
Morgan received her B.S. in Biochemistry from Santa Clara University. There she worked in a surface spectroscopy lab where she studied peptoid adsorption to lipid membranes for important implications in development of new antibacterial drugs. She also worked as an intern at ProNovus Bioscience, expressing and purifying a particular membrane protein transporter and characterizing its function.
In her free time Morgan enjoys reading, hitting the slopes in Tahoe, and watching Grey’s Anatomy.
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Nabil is an apprentice on the compute team. He received his B.S in Bioinformatics from UC Santa Cruz. During his time there he was a part of the schools iGEM team and helped create a programmatic gene editing solution to combat Shiga toxin-producing E. coli without the need for antibiotics. Additionally he was a part of the Treehouse Childhood Cancer Institute where he helped maintain pipelines used in analyzing bulk cancer gene expression data.
Outside of work, he enjoys wrenching on his bike, hiking, and anything else that gets him outside in nature.
Naomi is a quantitative cell biologist by training. At Octant she's worn a few different hats including recruiting, establishing the OA program, building Octant HQ, demonstrating Octant's multiplexed platform technology, building cell engineering, and more.
Naomi received her PhD from the University of California, San Diego under Roy Wollman quantifying how cells communicate with one another to determine their position in relation to a wound. She's passionate about bringing science to the public through effective scientific communication and meaningful technological advances.
Outside of work you'll find Naomi spending time with her family and two dogs, hiking, running, and playing the piano.
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Nathan Lubock is a computational biologist interested in deriving insights from large-scale experiments. Before joining Octant, he completed his Ph.D. in Biochemistry at UCLA under Sriram Kosuri. There he developed computational tools to understand and improve methods for multiplexed gene synthesis and GPCR-ligand interaction screens. In his free time, Nathan spends too much money on wine.
A Scalable, Multiplexed Assay for Decoding Receptor-Ligand Interactions. Jones EM, Jajoo R, Cancilla D, Lubock NB, Wang J, Satyadi M, Cheung R, March CD, Matsunami J, Kosuri S. bioRxiv, 358739.
Structural and functional characterization of G protein–coupled receptors with deep mutational scanning, EM Jones*, NB Lubock*, …, S Kosuri. eLife, 2020
A scalable, multiplexed assay for decoding GPCR-ligand interactions with RNA sequencing, EM Jones, R Jajoo, D Cancilla, NB Lubock, …, S Kosuri. Cell systems, 2020
Massively scaled-up testing for SARS-CoV-2 RNA via next-generation sequencing of pooled and barcoded nasal and saliva samples, JS Bloom, L Sathe, C Munugala, EM Jones, M Gasperini, NB Lubock, …, VA Arboleda. Nature Biomedical Engineering, 2021
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Nathan is a computational geneticist and a member of the Octant Compute team. He works on the design and statistical interpretation of multiplexed, high-throughput functional assays of human genetic variation. His other research interests include statistical human genetics, RNA-mediated post-transcriptional gene regulation and applied machine learning in molecular biology. He obtained his PhD in Genetics and MS in Statistics from Stanford University, and his BS in Molecular Biology and BA in Political Science from the University of Texas at Austin. In a past life, he contributed to empirical studies in comparative constitutional design and participated in/coached high school debate for many years.
Ramsey has spent his career building high-performance teams and technology companies. Before Octant, he was an executive at Dropbox, where he had roles leading Dropbox's communications, public policy & government affairs, human resources, legal, and trust & security teams. During that time Dropbox raised $1+ billion in capital, grew to more than 500 million users, and was the fastest SAAS company in history to reach $1 billion in revenue run rate. Prior to Dropbox, Ramsey was a Vice President at Google, where he managed Google's commercial legal groups and negotiated some of the internet industry's largest partnerships.
Before that, Ramsey was a technology attorney at Wilson Sonsini Goodrich & Rosati and a Lecturer at the University of Pennsylvania Law School. He has also done pro bono work representing indigent clients seeking political asylum. Ramsey received a B.S. in Chemical & Biochemical Engineering from Rutgers University and a J.D. from NYU.
Ramsey is a Board member at the Rutgers College of Engineering, and Represent.us, a grassroots political reform organization.
Ramsey grew up in Athens, Greece and Sparta, NJ. He enjoys hiking, camping, cooking over fire, punk music, and wandering through neighborhood art galleries.
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Robert trained as a biochemist and molecular biologist, and has joined Octant to work on developing Deep Mutational Scanning (DMS) approaches to understand the biology of naturally occurring variants and unlock its potential to drive drug discovery.
Robert obtained his PhD at the University of Pennsylvania in Roberto Bonasio’s lab, where he worked on developing mass spectrometry-based technologies to identify and characterizeRNA-binding proteins and applying these methods to understand the function of the chromatin regulator Polycomb Repressive Complex (PRC2). During the pandemic he also developed a high-throughput sequencing method using Loop Mediated Isothermal Amplification (LAMP) to detect COVID-19 and Influenza from human saliva. Robert was drawn to Octant by its emphas is on ‘rapid empiricism’, underpinned by the converging technologies of inexpensive DNA synthesis and sequencing, and believes these trends will greatly increase our understanding of disease biology in the coming years.
Outside work Robert likes to go hiking, cook for family and friends, and boring himself to sleep with newspaper articles about central bank policy.
Oksuz, O., Henninger, J.E., Warneford-Thomson, R., Zheng, M.M., Erb, H., Overholt, K.J.,Hawken, S.W., Banani, S.F., Lauman, R., Vancura, A., Robertson, A.L., Hannett, N.M., Lee, T.,Zon, L.I., Bonasio, R. & Young, R.A. Transcription factors interact with RNA to regulate genes. bioRxiv, 2022.
Warneford-Thomson, R., Shah, P.P., Lundgren, P., Lerner, J., Morgan, J., Davila, A., Abella,B.S., Zaret, K., Schug, J., Jain, R., Thaiss, C.A. & Bonasio, R. A LAMP sequencing approach for high-throughput co-detection of SARS-CoV-2 and influenza virus in human saliva. eLife, 2022.
Ren, W., Medeiros, N., Warneford-Thomson, R., Wulfridge, P., Yan, Q., Bian, J., Sidoli, S.,Garcia, B.A., Skordalakes, E., Joyce, E., Bonasio, R. & Sarma, K. Disruption of ATRX-RNA interactions uncovers roles in ATRX localization and PRC2 function. Nature Communications, 2020.
Zhang, Q.§, McKenzie, N.J.§, Warneford-Thomson, R.§, Gail, E.H., Flanigan, S.F., Owen, B.M.,Lauman, R., Levina, V., Garcia, B.A., Schittenhelm, R.B., Bonasio, R. & Davidovich, C. RNA exploits an exposed regulatory site to inhibit the enzymatic activity of PRC2. Nature Structural & Molecular Biology, 2019.
He, C., Sidoli, S., Warneford-Thomson, R., Tatomer, D.C., Wilusz, J.E., Garcia, B.A. & Bonasio, R. High-Resolution Mapping of RNA-Binding Regions in the Nuclear Proteome of Embryonic Stem Cells. Molecular Cell, 2016.
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Roy is a software engineer at Octant, working on building tools and infrastructure to empower scientists.
Roy received a Masters in Computer Science from the University of Toronto, and worked in the Tech industry for a number of years. Previous to Octant he discovered the Biotech world while working at Zymergen, and hasn’t looked back since.
In his spare time, Roy enjoys playing pool, making art, and doting on his pet lungfish.
Papers:
Luo, Roy; Valenzano, Richard; Li, Yi; Beck, J. Christopher; McIlraith, Sheila. "Using Metric
Temporal Logic to Specify Scheduling Problems." Proceedings, Fifteenth International Conference on Principles of Knowledge Representation and Reasoning (2016).
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Saagar is an Octant Apprentice on the Discovery team. Prior to joining Octant, Saagar received his B.S. in Biology at Duke University with a concentration in Cell and Molecular Biology. At Duke, he worked in Dr. Henry Yin's lab, where he investigated a molecular pathway for neural stem cell proliferation. He also interned with the New York Blood Center, studying the characteristics of COVID-19 convalescent plasma donors during the peak of the pandemic.In his spare time, Saagar enjoys playing basketball, trying new foods, and spending time with friends and family.
Papers:
Jain, S., Garg, K., Tran, S.M., et al. Characteristics of coronavirus disease 19 convalescent plasma donors and donations in the New York metropolitan area. Transfusion. 2021; 61: 2374– 2383. https://doi.org/10.1111/trf.16421
Sarah is a cell biologist with a background in high throughput screening.
She received her B.S. in Biological Sciences from University of Maryland Baltimore County. Sarah has worked in various industry labs over the years. She got her start at Precision Antibody, making custom monoclonal antibodies for customers. She then went to DNA Electronics, where she supported the development of a machine to rapidly diagnose sepsis. After that, Sarah returned to the Bay Area where she is originally from and worked at Marin Biologic Laboratories- a contract research organization- performing various cell-based assays for clients.
Before coming to Octant she worked at Carmot Therapeutics where she ran high throughput drug screening assays and developed cell-based assays to further characterize screening hits.
Outside of the lab, Sarah enjoys mountain biking, snowboarding, playing video games, and binge watching shows with her two cats.
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Sathvik is a software engineer at Octant focused on building software tools and infrastructure to accelerate research. He obtained his B.S.E from the University of Michigan in Computer Science. At Michigan, he was a part of the Computer-Aided Diagnosis Lab in the Department of Radiology, where he applied machine learning methods towards breast cancer diagnosis.
Sathvik enjoys watching/playing basketball, taking long walks, reading the first three chapters of a book, and watching lots of Parks and Rec.
Scott is a computational biologist passionate about developing usable tools for analyzing new types of high-throughput, biological data. He completed his PhD in Bioinformatics and Computational Biology in the lab of Dr. Chad Myers at the University of Minnesota, where his thesis work focused on the design and analysis of high-throughput, chemical-genetic interaction screens in yeast.
Outside of the lab, Scott enjoys international travel, playing the bass, cooking, and drinking non-IPA craft beer.
I am a bioinformatics software engineer with a passion for building software to push the boundaries of science and medicine. I have previously worked at institutions such as Memorial Sloan Kettering Cancer Center, Denali Therapeutics, and Illumina where I had the great opportunity to work alongside scientists and researchers to build out software solutions. I obtained my bachelors in biology and the University of Illinois Urbana Champaign before moving to the bay.
In my spare time I like to cook and watch too much tv.
Sri is a biologist that has helped build technologies, labs, and companies in synthetic biology, functional genomics, and bioinformatics over the last 20 years. He is passionate about developing more rational ways to understand and engineer biology.
Sri is a co-founder at Octant and an Associate Professor at UCLA in the Chemistry and Biochemistry Department, where his lab has worked on building large-scale ways of empirically exploring questions in protein biochemistry, human genetic variation, gene regulation, chemical biology, synthetic biology, and functional genomics.
Sri previously worked at the Wyss Institute and Harvard, where he built numerous technologies in gene synthesis, DNA information storage, gene editing, and large-scale multiplexed assays. He helped build Gen9, a gene synthesis company, as a member of the SAB and was the first employee of Joule Unlimited, an engineered algal biofuel company. He is a Searle Scholar (2015), NIH New Innovator (2014), and received his ScD in Biological Engineering at MIT and BS in Bioengineering at UC Berkeley.
Sri is originally from New Jersey, by way of Philadelphia and Kansas, and was born in North Carolina. He enjoys eating, getting outdoors, and traveling with his wife and two children.
Stacie is a Scientist in the Chemistry group with a background in chemical biology, metabolomics and (bio)synthesis.
She received her Ph.D. in Chemical Engineering from Stanford University under the supervision of Prof. Elizabeth Sattely. Her thesis work focused on medicinal plant natural product biosynthesis and engineering, accomplished with metabolite analysis of plant extracts and enzymatic assays by LC-qToF and metabolic engineering approaches for yield optimization.
Outside of the lab, Stacie enjoys traveling, cooking, and perhaps the combination of the two: trying out different cuisines.
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Sylvia runs People Operations at Octant. She is responsible for driving processes that make for healthy, high-performing teams, and scaling culture. Sylvia has extensive experience supporting highly technical teams. Prior to joining Octant, Sylvia was the first HR hire at Invitae and led the People team through the organization's rapid growth, supporting functions like compensation and benefits, employee experience, people analytics, learning and development, talent acquisition, and M&A. She also ran HR at Carnegie Mellon University's Silicon Valley campus where she supported engineering faculty as well as researchers and engineers at NASA Ames. Sylvia has a B.S. in Business Administration from Carnegie Mellon University and an MBA from University of California, Davis with concentrations in Strategy and Organizational Behavior. In her spare time, she cooks, listens to jazz, and plays ukulele for her twin toddlers.
Tao Zheng is our medicinal chemist. She received her PhD in organic chemistry from Michigan State University in 2006 and spent two years at UC Davis as a postdoctoral fellow. She returned to China to begin her career in process chemistry and custom organic synthesis. In 2016, she brought her talents back to the United States, working for Nanosyn, Inc in Santa Clara CA for five years before finally becoming an Octanaut in September of 2021.
She enjoys watching movies, cooking, and spending quality time with her cat, Pinky.
Tarek does business operations at Octant and loves the multidisciplinary nature of being a generalist.
Prior to Octant, Tarek was an Operations Generalist at On Deck, both working internally on building operational processes, systems, and infrastructure as well as externally supporting founders and fellows in the community.
Tarek graduated from American University, spending most of his time learning and building as a member of the university’s startup incubator and Institute for IDEAS.
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Terry is an organic chemist. He specialized in transition metal-catalysis and method development, with a background of flow chemistry and electrochemical synthesis. As a Synthetic Chemistry Methodologist, Terry develops new synthesis on Octant’s high-throughput chemistry platform and enables new chemical space for drug discovery.
Prior to joining Octant, Terry was a postdoctoral fellow in Scripps Research working with Prof Phil Baran. He obtained his DPhil degree from the University of Oxford in the UK, under Prof Michael Willis’ supervision. During his undergraduate study, Terry also worked in Prof Chi-Ming Che’s and Prof Steve Ley’s group in the University of Hong Kong and University of Cambridge, respectively.
Outside of the lab, Terry enjoys cooking, traveling and working out in the gym.
Theo is a biologist in the Platform group with experience in assay development and the study of cancer therapies. He received a B.S. in Biology, with a minor in Biochemistry, at the University of San Francisco. At Roche Molecular Systems, he participated in the research and development of medical diagnostic assays for targets such as HIV and genetic mutations implicated in lung cancer. Then, at UCSF under Dr. Catherine Smith, he researched mechanisms of response and resistance to targeted drug therapy for acute myeloid leukemia. Outside of the lab, Theo enjoys golfing, hiking, and following his Bay Area sports teams.
Smith, C.C., Viny, A.D., Massi, E., Kandoth, C., Socci, N.D., Rapaport, F., Najm, M., Medina-Martinez, J.S.,Papaemmanuil, E. Tarver, T.C., Hsu, H.H., Le, M.H., West, B., Bollag, G., Taylor, B.S., Levine. R.L., & Shah, N.P. Recurrent Mutations in Cyclin D3 Confer Clinical Resistance to FLT3 Inhibitors in Acute Myeloid Leukemia. Clinical Cancer Research (2021) 27 (14), 14, 4003-4011
Tarver, T., Hill, J. Rahmat, L., Perl, A., Bahceci, E., Mori, K., & Smith, C C. Gilteritinib is a clinically active FLT3 inhibitor with broad activity against FLT3 kinase domain mutations. Blood Adv (2020) 4 (3): 514–524.
Smith, C. C., Paguirigan, A., Jeschke, G. R., Lin, K. C., Massi, E., Tarver, T., Chin, C. S., Asthana, S., Olshen, A., Travers, K. J., Wang, S., Levis, M. J., Perl, A. E., Radich, J. P., & Shah, N. P. (2017). Heterogeneous resistance to quizartinib in acute myeloid leukemia revealed by single-cell analysis. Blood (2017), 130 (1), 48–58.
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Yannah is passionate about people and developing solutions to improve human health. She is a member of the Octant Compute team and uses cheminformatics to support Octant technologies. Yannah received her BSE in Chemical Engineering from the University of Michigan (GO BLUE). As an undergraduate, she was a member of the Glotzer Group at the University of Michigan and the Keiser Lab at UCSF, as well as held an internship position at Sutro Biopharma. In the Glotzer Group, Yannah studied nucleation pathways of the self-assembly process of crystal structures. In the Keiser Lab, she worked on projects to identify melanoma by classifying histopathology images and investigated ligand-based drug discovery. Yannah needs a lot of sun and loves to experience different cultures and share her own.
Yuning is a chemist with a background in novel transition metal catalyzed methodology development enabled by high throughput chemistry.
Yuning obtained her PhD in medicinal chemistry from University of Michigan under the supervision of Dr. Tim Cernak. Her research focused on identifying new reactivity, achieved by copper catalysis for amine–acid coupling facilitated by cheminformatic analysis. Such method development is enabled by nanoscale synthesis on a high throughput chemistry platform that was established in Tim’s lab.
Outside of lab, she likes to play video games and spend time with her cats.
Shen, Y., Mahjour B. and Cernak, T., Development of deaminative esterification using high-throughput experimentation. Commun. Chem., 5, 83 (2022).
Shen, Y., Borowski, J.E., Hardy, M.A., Sarpong, R., Doyle, A.G. and Cernak, T., Automation and computer-assisted planning for chemical synthesis. Nat. Rev. Methods Primers, 1,1-23 (2021).
Mahjour, B., Shen, Y. and Cernak, T., Ultrahigh-Throughput Experimentation for Information-Rich Chemical Synthesis. Acc. Chem. Res., 54, 2337-2346, (2021).
Lin, Y., Zhang, Z., Mahjour, B., Wang, D., Zhang, R., Shim, E., McGrath, A., Shen, Y., Brugger, N., Turnbull, R. and Trice, S., Reinforcing the supply chain of umifenovir and other antiviral drugs with retrosynthetic software. Nat. Commun., 12, (2021).
Mahjour, B., Shen, Y., Liu, W., & Cernak, T., A map of the amine–carboxylic acid coupling system. Nature, 580, 71-75 (2020).
Shen, Y., Lee, W.C.C., Gutierrez, D.A. and Li, J.J., Palladium-Catalyzed Direct C(sp2)–H ortho-Arylation of Anilides Using 2-Aminophenylpyrazole as the Directing Group. J. Org. Chem., 82, 11620-11625 (2017).
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Zach recently started at Octant as a Research Associate working on high-throughput chemical assembly and screening. He graduated from James Madison University with a B.S. in Biotechnology in 2021. While at JMU, Zach was a research assistant in the lab of George Vidal where he studied the effect of integrin beta-3 deficiency on the morphology of cortical neurons in the developing mouse brain.
Outside of the lab, Zach enjoys, hiking, playing board games, and slaying monsters in Dungeons and Dragons.
Charles S. Zuker is an American molecular geneticist and neurobiologist of Chilean descent. His lab, in collaboration with Nick Ryba at the NIH, have transformed our understanding of cell signaling and mammalian taste. Zuker is an Investigator of the Howard Hughes Medical Institute and a Senior Fellow at the Janelia Research Campus. Zuker is a member of the National Academy of Sciences, the National Academy of Medicine, and the American Academy of Arts and Sciences. After more than 20 years at the University of California, San Diego, he began his appointment at Columbia University in 2009.
Vijay Pande, PhD, is a general partner at Andreessen Horowitz, where he focuses on investments in biopharma and healthcare. As the founding investor of a16z’s Bio Fund, Vijay leads the firm’s investments at the cross section of biology and computer science, including applications in computation, machine learning, and artificial intelligence in healthcare; digital therapeutics; diagnostics; and other novel transformative scientific advances applied to industry that take bio beyond healthcare. Op-eds by Vijay defining trends and issues in this emerging space have been published by The New York Times, Scientific American, and Forbes, among others. He is also an Adjunct Professor of Bioengineering at Stanford University.
Previously, Vijay was the Henry Dreyfus Professor of Chemistry and Professor of Structural Biology and of Computer Science at Stanford University, where he led a team of researchers pioneering computational methods and their application to medicine and biology (resulting in over 300 publications, two patents, and two novel drug candidates). Vijay was also concurrently the director of the Biophysics program at Stanford, where he led a team of more than 50 faculty members and propelled the program to the top in the country.
During his time at Stanford, Vijay co-founded Globavir Biosciences, where he translated his research advances into a successful startup that aimed to discover cures for Dengue Fever and Ebola. Vijay also founded the Folding@Home Distributed Computing Project for disease research, which pushed the boundaries of computer science techniques (distributed systems, machine learning, and exotic computer architectures) into biology and medicine, in both research as well as the development of new therapeutics.
Vijay holds a BA in Physics from Princeton University and a PhD in Physics from MIT. He has been awarded the DeLano Prize in Computation; a Guinness World Record for Folding@Home; the American Chemical Society Thomas Kuhn Paradigm Shift Award; and was selected for MIT TR10. In his teens, Vijay was the first employee at video game startup Naughty Dog Software, maker of Crash Bandicoot.
After studying at City College of San Francisco, Hosea obtained a B.S. in Chemistry from University of California Berkeley and a Ph.D. from the California Institute of Technology in 2012 under the mentorship of Brian Stoltz. After postdoctoral training at University of California Berkeley with Dean Toste, Hosea joined the UCLA faculty in 2015 as an assistant professor. In 2021 he moved his group to Caltech where they currently focus on developing enabling technologies for the biomedical sciences. More specifically they utilize cutting-edge electron microscopy methods to identify new bioactive small molecules and main group metal catalysis to prepare complex molecules through novel chemical reactions.
Debora is a mathematician and computational biologist with a track record of using novel algorithms and statistics to successfully address unsolved biological problems. She has a passion for interpreting genetic variation in a way that impacts biomedical applications. During her PhD, she quantified the potential pan-genomic scope of microRNA targeting and combinatorial regulation of protein expression and co-discovered the first microRNA in a virus. As a postdoc she and her colleagues cracked the classic, unsolved problem of ab initio 3D structure prediction of proteins using a maximum entropy probability model for evolutionary sequences. She has developed this approach to determine functional interactions, biomolecular structures, including the 3D structure of RNA and RNA-protein complexes and the conformational ensembles of apparently disordered proteins. Her new lab at Harvard is interested in developing methods in deep learning to address a wide range of biological challenges including predicting the effects of genetic variation and sequence design for biosynthetic applications.
Mark Murcko was an early leader in structure-based drug design and has directly contributed to nine marketed drugs spanning HIV, HCV, cystic fibrosis, and glaucoma. He is a Founder, Board member, and was the interim CSO at Relay Therapeutics. More recently he was the founding CSO and remains a board member and advisor to Dewpoint Therapeutics. In addition, Mark is a senior lecturer in the Department of Biological Engineering at MIT, and has served on numerous scientific advisory boards and corporate boards of directors for a diverse range of organizations. Mark was chief technology officer and chair of the SAB of Vertex Pharmaceuticals and was responsible for the identification, validation and implementation of disruptive technologies across R&D. Mark is a co-inventor of the HCV protease inhibitor Incivek (telaprevir), as well as Agenerase (amprenavir) and Lexiva (fosamprenavir), Vertex’s two marketed drugs for the treatment of HIV. In addition, he guided the early efforts of Vertex’s cystic fibrosis program that has produced four marketed drugs.
Prior to Vertex, Mark worked at Merck Sharpe & Dohme, where he helped discover multiple clinical candidates, including Dorzolamide, a carbonic anhydrase inhibitor for the treatment of glaucoma which was commercialized in two approved drugs, Trusopt and Cosopt. Trusopt was the first medicine in history to come from a structure-based drug design program. He is a member of the Board of Trustees of the GRC and the Board of Advisors of the Boston Museum of Science. He is a co-inventor on more than 50 issued patents and has co-authored more than 85 scientific articles. Mark holds a Ph.D. in organic chemistry from Yale University.
Feng Zhang is a core institute member of the Broad Institute of MIT and Harvard, as well as an investigator at the McGovern Institute for Brain Research at MIT, the James and Patricia Poitras Professor of Neuroscience at MIT, and a professor at MIT, with joint appointments in the departments of Brain and Cognitive Sciences and Biological Engineering. Zhang is also an investigator at the Howard Hughes Medical Institute.
Zhang is a molecular biologist developing and applying novel molecular technologies for studying the brain. Zhang pioneered the development of genome editing tools for use in eukaryotic cells – including human cells – from natural microbial CRISPR-Cas9 systems. He and his team have adapted multiple other CRISPR systems for use as genome engineering tools, including RNA-targeting CRISPR-Cas13 systems and CRISPR-associated transposon systems, which can be used for gene insertion.
Zhang leverages CRISPR and other methods to study the genetics and epigenetics of human diseases, especially complex disorders, such as psychiatric and neurological diseases that are caused by multiple genetic and environmental risk factors and are difficult to model using conventional methods. His lab’s tools, which he has made widely available, are also being used in the fields of immunology, clinical medicine, and cancer biology, among others. His long-term goal is to develop novel therapeutic strategies for disease treatment.
Zhang is a recipient of many awards including the Canada Gairdner International Award, the Tang Prize, the Blavatnik National Award for Young Scientists, the Albany Medical Center Prize in Medicine and Biomedical Research, the Lemelson-MIT Prize, and the Keio Medical Science Prize. He has also received technology innovation awards from the Paul G. Allen Family, McKnight, New York Stem Cell, and Damon Runyon foundations. Zhang is an elected member of the National Academy of Sciences and the American Academy of Arts and Sciences.
Zhang received his A.B. in chemistry and physics from Harvard College and his Ph.D. in chemistry from Stanford University.
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